Tfsitescan
(Institute for Transcriptional Informatics,
Pittsburgh, U.S.A.)
PLACE
(National Institute of Agrobiological Sciences, Japan) - Plant cis-acting
regulatory DNA elements. PlnTFDB - Plant
Transcriptional Factor Database - allows BLAST
searching (Reference:P. Pérez-Rodríguez et al. 2009 Nucl. Acids Res.
38: D822-D872) or here for
related site.
DBD:
Transcription factor prediction database (Reference: D. Wilson et al. 2010. Nucl. Acids Res.
36: D88-D92)
(Gesellschaft für Biotechnologische
Forschung mbH (GBF), Braunschweig, Germany) - The
Transcription Factor
Database.
rVista 2.0
(Comparative Genomics Center, Lawrence Livermore National
Laboratory, U.S.A.) - High-throughput discovery of
functional regulatory elements in sequence alignments. Excluding up to 95% false positive transcription factor binding
sites predictions
while maintaining high sensitivity of the search.
TESS
(Transcription Element Search System) is a web
tool for predicting transcription factor binding sites in DNA sequences.
It can identify binding sites using site or consensus strings and
positional weight matrices from the TRANSFAC, JASPAR, IMD, and our
CBIL-GibbsMat database. This resource is
best for scanning short DNA
sequences.