IHF MOTIF
I have presented data the IHF-binding site (consensus: WWWTCAA[N4]TTR) below.
A. Motif model
(residue frequency x 100)
|
Pos. # |
a |
t |
c |
g |
Info |
|
1 | |
48 |
29 |
6 |
15 |
0.1 |
|
2 | |
50 |
29 |
15 |
5 |
0.1 |
|
3 | |
84 |
15 |
. |
. |
0.7 |
|
4 | |
58 |
36 |
. |
5 |
0.3 |
|
5 | |
15 |
72 |
10 |
1 |
0.4 |
|
6 | |
1 |
13 |
72 |
12 |
1.3 |
|
7 | |
77 |
10 |
12 |
. |
0.5 |
|
8 | |
51 |
29 |
5 |
13 |
0.1 |
|
9 | |
29 |
34 |
25 |
10 |
0.1 |
|
10 | |
34 |
34 |
13 |
17 |
0.0 |
|
11 | |
56 |
3 |
8 |
31 |
0.5 |
|
12 | |
34 |
6 |
18 |
39 |
0.5 |
|
13 | |
27 |
70 |
1 |
. |
0.5 |
|
14 | |
5 |
93 |
. |
1 |
1.0 |
|
15 | |
60 |
15 |
3 |
20 |
0.3 |
|
16 | |
22 |
44 |
17 |
15 |
0.1 |
B. Motif probability model
|
Pos. # |
a |
t |
c |
g |
|
1 | |
0.479 |
0.295 |
0.072 |
0.154 |
|
2 | |
0.496 |
0.295 |
0.155 |
0.054 |
|
3 | |
0.829 |
0.161 |
0.005 |
0.004 |
|
4 | |
0.579 |
0.361 |
0.005 |
0.054 |
|
5 | |
0.163 |
0.711 |
0.105 |
0.021 |
|
6 | |
0.029 |
0.145 |
0.705 |
0.121 |
|
7 | |
0.763 |
0.111 |
0.122 |
0.004 |
|
8 | |
0.513 |
0.295 |
0.055 |
0.138 |
|
9 | |
0.296 |
0.345 |
0.255 |
0.104 |
|
10 | |
0.346 |
0.345 |
0.138 |
0.171 |
|
11 | |
0.563 |
0.045 |
0.088 |
0.304 |
|
12 | |
0.346 |
0.078 |
0.188 |
0.388 |
|
13 | |
0.279 |
0.695 |
0.022 |
0.004 |
|
14 | |
0.063 |
0.911 |
0.005 |
0.021 |
|
15 | |
0.596 |
0.161 |
0.038 |
0.204 |
|
16 | |
0.229 |
0.445 |
0.172 |
0.154 |
C.
Alternatively here is a simple count: This can be determined from RSA-tools - consensus
|
Pos # |
A |
C |
G |
T
|
|
1 |
23 |
4 |
12 |
19 |
|
2 |
30 |
7 |
3 |
19 |
|
3 |
37 |
1 |
2 |
19 |
|
4 |
35 |
1 |
3 |
20 |
|
5 |
11 |
0 |
1 |
47 |
|
6 |
3 |
49 |
4 |
3 |
|
7 |
55 |
1 |
1 |
2 |
|
8 |
41 |
1 |
8 |
9 |
|
9 |
14 |
16 |
9 |
20 |
|
10 |
25 |
10 |
11 |
13 |
|
11 |
28 |
9 |
13 |
8 |
|
12 |
15 |
11 |
26 |
7 |
|
13 |
5 |
4 |
1 |
49 |
|
14 |
5 |
3 |
0 |
51 |
|
15 |
37 |
3 |
17 |
2 |
|
16 |
15 |
13 |
10 |
21 |