Conversion of gbk genome data into a form compatable with CoreGenes

1. The first step is to extract the proteins from the gbk file.  For this I use Genome2D resulting in the following type of
results for phage 4HA13 (locus tag AC4HA13):

>AC4HA13_000
MKPNYVAIRKSKEAMFHRFIEAKRKAELEGKVVIKKKKKNKKKNYNIFFFLLSR
>AC4HA13_010
MTYYDADLGLVMCESELSLEIDALDWEHELPKGEPQWGDDDYVYVAPTDEFDIPF

2. Copy and paste these into Notepad.
3. Check for spurious characters and deleted them.  I sometimes find quotation marks (").
4. Using the Replace feature of Notepad to replace >AC4HA13 with >gp|AC4HA13|AC4HA13_% giving:

>gp|AC4HA13|AC4HA13_%000
MKPNYVAIRKSKEAMFHRFIEAKRKAELEGKVVIKKKKKNKKKNYNIFFFLLSR
>gp|AC4HA13|AC4HA13_%010
MTYYDADLGLVMCESELSLEIDALDWEHELPKGEPQWGDDDYVYVAPTDEFDIPF

5. The tedious part - paste |[Escherichia phage 4HA13] at the end of each fasta row

>gp|AC4HA13|AC4HA13_%000|[Escherichia phage 4HA13]
MKPNYVAIRKSKEAMFHRFIEAKRKAELEGKVVIKKKKKNKKKNYNIFFFLLSR
>gp|AC4HA13|AC4HA13_%010|[Escherichia phage 4HA13]
MTYYDADLGLVMCESELSLEIDALDWEHELPKGEPQWGDDDYVYVAPTDEFDIPF

6. Paste this into Custom Data in CoreGenes 3.5